PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1172440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 467aa    MW: 52712.5 Da    PI: 4.7441
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1172440.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.57.9e-34581971128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgy 82 
                      lp+G++F+P+d+e++++ L+k  +g++     ++++ +  evd  i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+++     + +
  Lj2g3v1172440.1  58 LPKGVKFDPSDQEIIWHLLAKVGSGNSrphpfIDEFIATLEVDdgICYTHPQNLP-GVKQDGNASHFFHRAIKAYNTGTRKRRKIHgqdfgDVR 150
                      799************888887777777887665554554455345**********.778889999******************86555555888 PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      W++tgk+k+v+  +g ++g+kk++v+y  + r  k+ekt+Wvmh+y+l
  Lj2g3v1172440.1 151 WHKTGKTKPVIL-NGVQKGCKKIMVLYmnTVRGGKPEKTNWVMHQYHL 197
                      ************.999***********6544778888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-3943216IPR003441NAC domain
PROSITE profilePS5100531.13758216IPR003441NAC domain
PfamPF023653.2E-1459197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAGPSWLVDK SRIATKIKSA SGGCDPEQIA WKSNPSKTCP NCQHAIDNND VAHEWPGLPK  60
GVKFDPSDQE IIWHLLAKVG SGNSRPHPFI DEFIATLEVD DGICYTHPQN LPGVKQDGNA  120
SHFFHRAIKA YNTGTRKRRK IHGQDFGDVR WHKTGKTKPV ILNGVQKGCK KIMVLYMNTV  180
RGGKPEKTNW VMHQYHLGTE EDEKDGEFVI SKVFYQQTLV KLGDKDHQNV TEAIETTEAT  240
IVKADPVTPK SVSPEPLCTE REYSDFDVGP EMHTIPQLPQ MDRLDEIRAD CEDLLKADLL  300
MVENQLNEDM DNQENNADEE NMDNKENNAD EGQKWWDCGS QNLLDSQQLD NKENNADEGQ  360
KWWDSESQNL LDSQQLVEAL SLCDDLLHSQ SPGRDGKRGE HKDQLGLSVY AQLGPEHLKK  420
DIEECQKLVL DPANIEHDTP PSEFRLSQLE FGSQDSFTSW GYGKTVN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105080.0AP010508.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT28N02, TM1615, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614420.10.0NAC transcription factor-like protein
SwissprotQ6NQK21e-178NAC8_ARATH; NAC domain-containing protein 8
TrEMBLG7JX370.0G7JX37_MEDTR; NAC transcription factor-like protein
STRINGGLYMA01G22510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56623354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-176NAC family protein